2D image deconvolution using sparse variation model. This deconvolution algorithm is designed for images with low signal like microscopy images:
The full documentation is avalable here
They are three main parameters to tune:
More details are avalable here
To run the deconvolution in the AllGo interface:
Set the command line in the parameters input (change the values with your settings):
-i name_of_your_input_image.tif -o output.tif -sigma 2 -regularization 11 -weighting 0.6
In order to run a job you need to be identified or register a new account.
The following curl command will create a job (note: job[webapp] is required, all other parameters are optional):
curl -H 'Authorization: Token token=<your private_token>' \
-X POST https://allgo18.inria.fr/api/v1/jobs \
-F 'job[webapp]=svdeconv' \
-F 'job[version]=1.0.0' \
-F 'job[param]=' \
-F 'job[queue]=standard' \
-F 'files[0]=@test.txt' \
-F 'files[1]=@test2.csv'
Monitor its progress:
curl -H 'Authorization: Token token=<your private_token>' \
https://allgo18.inria.fr/api/v1/jobs/JOB_ID/events
Get the result:
curl -H 'Authorization: Token token=<your private_token>' \
https://allgo18.inria.fr/api/v1/jobs/JOB_ID
Abort the job:
curl -H 'Authorization: Token token=<your private_token>' \
-X POST https://allgo18.inria.fr/api/v1/jobs/JOB_ID/abort
Delete the job:
curl -H 'Authorization: Token token=<your private_token>' \
-X DELETE https://allgo18.inria.fr/api/v1/jobs/JOB_ID